This book helps readers integrate in silico, in vitro, and in vivo ADMET (absorption, distribution, metabolism, elimination and toxicity) and PK (pharmacokinetics) data with routine testing applications so that pharmaceutical scientists can diagnose ADMET problems and present appropriate recommendations to move drug discovery programs forward. The book introduces the current clinical practice for drug discovery and development along with the impact on early risk assessment; consolidates the tools and models to intelligently integrate existing in silico, in vitro and in vivo ADMET data; and demonstrates successful cases and lessons learned from real drug discovery and development. In short, it is a book aimed to provide a practical road map for drug discovery and development scientists to generate efficacious and safe drugs for unmet medical needs.
Jianling Wang is the Cambridge Head of Discovery ADME at Novartis Institutes for BioMedical Research. He has published over 40 journal papers, reviews, and book chapters and lectured at over 30 scientific conferences and courses. Laszlo Urban is the Executive Director for Preclinical Safety Profiling at Novartis Institutes for BioMedical Research. He has over 10 years of experience in academia and 20 years in the pharmaceutical industry. Among Dr. Urban's publications are over 120 peer-reviewed scientific papers, 3 books including Hit and Lead Profiling: Identification and Optimization of Drug-like Molecules (Wiley, 2009).
PREFACE ix CONTRIBUTORS xi I INTRODUCTION TO THE CURRENT SCIENTIFIC, CLINICAL, AND SOCIAL ENVIRONMENT OF DRUG DISCOVERY AND DEVELOPMENT 1 Current Social, Clinical, and Scientific Environment of Pharmaceutical R&D 3 Laszlo Urban, Jean-Pierre Valentin, Kenneth I Kaitin, and Jianling Wang 2 Polypharmacology and Adverse Bioactivity Profiles Predict Potential Toxicity and Drug-related ADRs 23 Teresa Kaserer, Veronika Temml, and Daniela Schuster II INTELLIGENT INTEGRATION AND EXTRAPOLATION OF ADMET DATA 3 ADMET Diagnosis Models 49 Bernard Faller, Suzanne Skolnik, and Jianling Wang 4 PATH (Probe ADME and Test Hypotheses): A Useful Approach Enabling Hypothesis-driven ADME Optimization 63 Leslie Bell, Suzanne Skolnik, and Dallas Bednarczyk 5 PK-MATRIX--A Permeability: Intrinsic Clearance System for Prediction, Classification, and Profiling of Pharmacokinetics and Drug-drug Interactions 89 Urban Fagerholm 6 Maximizing the Power of a Local Model for ADMET-property Prediction 103 Sebastien Ronseaux, Jeremy Beck, and Clayton Springer 7 Chemoinformatic and Chemogenomic Approach to ADMET 125 Virginie Y. Martiny, Ilza Pajeva, Michael Wiese, Andrew M. Davis, and Maria A. Miteva 8 Multiparameter Optimization of ADMET for Drug Design 145 Matthew D. Segall and Edmund J. Champness 9 PBPK: Integrating In Vitro and In Silico Data in Physiologically Based Models 167 Hannah M. Jones and Neil Parrott 10 Emerging Full Mechanistic Physiologically Based Modeling 189 Kiyohiko Sugano 11 Pharmacokinetic/Pharmacodynamic Modeling in Drug Discovery: A Translational Tool to Optimize Discovery Compounds Toward the Ideal Target-specific Profile 211 Patricia Schroeder III ASSESSMENT AND MITIGATION OF CRITICAL CLINICALLY RELEVANT ADMET RISKS IN DRUG DISCOVERY AND DEVELOPMENT 12 In Vitro-In Silico Tools to Predict Pharmacokinetics of Poorly Soluble Drug Compounds 235 Christian Wagner and Jennifer B. Dressman 13 Evaluation of the Collective Impact of Passive Permeability and Active Transport on In Vivo Blood-brain Barrier and Gastrointestinal Drug Absorption 263 Donna A. Volpe, Hong Shen, and Praveen V. Balimane 14 Integrated Assessment of Drug Clearance and Cross-Species Scalability 291 Kevin Beaumont, James R. Gosset, and Chris E. Keefer 15 Practical Anticipation of Human Efficacious Doses and Pharmacokinetics using Preclinical In Vitro and In Vivo Data 319 Tycho Heimbach, Rakesh Gollen, and Handan He 16 Management and Mitigation of Human Drug-drug Interaction Risks in the Drug Discovery and Development Phases 353 Heidi J. Einolf and Imad Hanna 17 Integrated Assessment and Clinical Translation of In Vitro Off-target Safety Pharmacology Risks 397 Patrick Y. Muller and Christian F. Trendelenburg 18 Integrated Risk Assessment of Cardiovascular Safety in Drug Discovery 407 G¿ul Erdemli and Ruth L. Martin 19 Drug-induced Hepatotoxicity: Advances in Preclinical Predictive Strategies and Tools 433 Donna M. Dambach 20 Carcinogenicity and Teratogenicity Assessment 467 Hans-J¿org Martus, David Beckman, and Lutz Mueller 21 Nephrotoxicity: Development of Biomarkers for Preclinical and Clinical Application 491 Frank Dieterle and Estelle Marrer IV SUCCESS STORIES AND LESSONS LEARNED 22 Early Intervention with Formulation Strategies for Multidimensional Problems to Optimize for Success 507 Stephanie Dodd, Christina Capacci-Daniel, Christopher Towler, Riccardo Panicucci, and Keith Hoffmaster 23 Cytochrome P450-mediated Drug Interaction and Cardiovascular Safety: The Seldane to Allegra Transformation 523 F. Peter Guengerich 24 Clinical Toxicity Profile of VEGF Inhibitors 535 Mark P. S. Sie and Ferry A. L. M. Eskens 25 Cardiomyopathy: Drug Induced and Predisposed 555 Shirley A. Aguirre and Eileen R. Blasi 26 Safety Management by Pharmacokinetic Considerations: Ranibizumab (Lucentis) and Bevacizumab (Avastin) 569 Nicole H. Siegel and Manju L. Subramanian INDEX 583
Show moreThis book helps readers integrate in silico, in vitro, and in vivo ADMET (absorption, distribution, metabolism, elimination and toxicity) and PK (pharmacokinetics) data with routine testing applications so that pharmaceutical scientists can diagnose ADMET problems and present appropriate recommendations to move drug discovery programs forward. The book introduces the current clinical practice for drug discovery and development along with the impact on early risk assessment; consolidates the tools and models to intelligently integrate existing in silico, in vitro and in vivo ADMET data; and demonstrates successful cases and lessons learned from real drug discovery and development. In short, it is a book aimed to provide a practical road map for drug discovery and development scientists to generate efficacious and safe drugs for unmet medical needs.
Jianling Wang is the Cambridge Head of Discovery ADME at Novartis Institutes for BioMedical Research. He has published over 40 journal papers, reviews, and book chapters and lectured at over 30 scientific conferences and courses. Laszlo Urban is the Executive Director for Preclinical Safety Profiling at Novartis Institutes for BioMedical Research. He has over 10 years of experience in academia and 20 years in the pharmaceutical industry. Among Dr. Urban's publications are over 120 peer-reviewed scientific papers, 3 books including Hit and Lead Profiling: Identification and Optimization of Drug-like Molecules (Wiley, 2009).
PREFACE ix CONTRIBUTORS xi I INTRODUCTION TO THE CURRENT SCIENTIFIC, CLINICAL, AND SOCIAL ENVIRONMENT OF DRUG DISCOVERY AND DEVELOPMENT 1 Current Social, Clinical, and Scientific Environment of Pharmaceutical R&D 3 Laszlo Urban, Jean-Pierre Valentin, Kenneth I Kaitin, and Jianling Wang 2 Polypharmacology and Adverse Bioactivity Profiles Predict Potential Toxicity and Drug-related ADRs 23 Teresa Kaserer, Veronika Temml, and Daniela Schuster II INTELLIGENT INTEGRATION AND EXTRAPOLATION OF ADMET DATA 3 ADMET Diagnosis Models 49 Bernard Faller, Suzanne Skolnik, and Jianling Wang 4 PATH (Probe ADME and Test Hypotheses): A Useful Approach Enabling Hypothesis-driven ADME Optimization 63 Leslie Bell, Suzanne Skolnik, and Dallas Bednarczyk 5 PK-MATRIX--A Permeability: Intrinsic Clearance System for Prediction, Classification, and Profiling of Pharmacokinetics and Drug-drug Interactions 89 Urban Fagerholm 6 Maximizing the Power of a Local Model for ADMET-property Prediction 103 Sebastien Ronseaux, Jeremy Beck, and Clayton Springer 7 Chemoinformatic and Chemogenomic Approach to ADMET 125 Virginie Y. Martiny, Ilza Pajeva, Michael Wiese, Andrew M. Davis, and Maria A. Miteva 8 Multiparameter Optimization of ADMET for Drug Design 145 Matthew D. Segall and Edmund J. Champness 9 PBPK: Integrating In Vitro and In Silico Data in Physiologically Based Models 167 Hannah M. Jones and Neil Parrott 10 Emerging Full Mechanistic Physiologically Based Modeling 189 Kiyohiko Sugano 11 Pharmacokinetic/Pharmacodynamic Modeling in Drug Discovery: A Translational Tool to Optimize Discovery Compounds Toward the Ideal Target-specific Profile 211 Patricia Schroeder III ASSESSMENT AND MITIGATION OF CRITICAL CLINICALLY RELEVANT ADMET RISKS IN DRUG DISCOVERY AND DEVELOPMENT 12 In Vitro-In Silico Tools to Predict Pharmacokinetics of Poorly Soluble Drug Compounds 235 Christian Wagner and Jennifer B. Dressman 13 Evaluation of the Collective Impact of Passive Permeability and Active Transport on In Vivo Blood-brain Barrier and Gastrointestinal Drug Absorption 263 Donna A. Volpe, Hong Shen, and Praveen V. Balimane 14 Integrated Assessment of Drug Clearance and Cross-Species Scalability 291 Kevin Beaumont, James R. Gosset, and Chris E. Keefer 15 Practical Anticipation of Human Efficacious Doses and Pharmacokinetics using Preclinical In Vitro and In Vivo Data 319 Tycho Heimbach, Rakesh Gollen, and Handan He 16 Management and Mitigation of Human Drug-drug Interaction Risks in the Drug Discovery and Development Phases 353 Heidi J. Einolf and Imad Hanna 17 Integrated Assessment and Clinical Translation of In Vitro Off-target Safety Pharmacology Risks 397 Patrick Y. Muller and Christian F. Trendelenburg 18 Integrated Risk Assessment of Cardiovascular Safety in Drug Discovery 407 G¿ul Erdemli and Ruth L. Martin 19 Drug-induced Hepatotoxicity: Advances in Preclinical Predictive Strategies and Tools 433 Donna M. Dambach 20 Carcinogenicity and Teratogenicity Assessment 467 Hans-J¿org Martus, David Beckman, and Lutz Mueller 21 Nephrotoxicity: Development of Biomarkers for Preclinical and Clinical Application 491 Frank Dieterle and Estelle Marrer IV SUCCESS STORIES AND LESSONS LEARNED 22 Early Intervention with Formulation Strategies for Multidimensional Problems to Optimize for Success 507 Stephanie Dodd, Christina Capacci-Daniel, Christopher Towler, Riccardo Panicucci, and Keith Hoffmaster 23 Cytochrome P450-mediated Drug Interaction and Cardiovascular Safety: The Seldane to Allegra Transformation 523 F. Peter Guengerich 24 Clinical Toxicity Profile of VEGF Inhibitors 535 Mark P. S. Sie and Ferry A. L. M. Eskens 25 Cardiomyopathy: Drug Induced and Predisposed 555 Shirley A. Aguirre and Eileen R. Blasi 26 Safety Management by Pharmacokinetic Considerations: Ranibizumab (Lucentis) and Bevacizumab (Avastin) 569 Nicole H. Siegel and Manju L. Subramanian INDEX 583
Show morePreface ix
Contributors xi
I Introduction to the Current Scientific, Clinical, and Social Environment of Drug Discovery and Development
1 Current Social, Clinical, and Scientific Environment of
Pharmaceutical R&D 3
Laszlo Urban, Jean-Pierre Valentin, Kenneth I Kaitin, and Jianling
Wang
2 Polypharmacology and Adverse Bioactivity Profiles Predict
Potential Toxicity and Drug-related ADRs 23
Teresa Kaserer, Veronika Temml, and Daniela Schuster
II Intelligent Integration and Extrapolation of Admet Data
3 ADMET Diagnosis Models 49
Bernard Faller, Suzanne Skolnik, and Jianling Wang
4 PATH (Probe ADME and Test Hypotheses): A Useful Approach
Enabling Hypothesis-driven ADME Optimization 63
Leslie Bell, Suzanne Skolnik, and Dallas Bednarczyk
5 PK-MATRIX—A Permeability: Intrinsic Clearance System for
Prediction, Classification, and Profiling of Pharmacokinetics and
Drug–drug Interactions 89
Urban Fagerholm
6 Maximizing the Power of a Local Model for ADMET-property
Prediction 103
Sebastien Ronseaux, Jeremy Beck, and Clayton Springer
7 Chemoinformatic and Chemogenomic Approach to ADMET 125
Virginie Y. Martiny, Ilza Pajeva, Michael Wiese, Andrew M. Davis,
and Maria A. Miteva
8 Multiparameter Optimization of ADMET for Drug Design 145
Matthew D. Segall and Edmund J. Champness
9 PBPK: Integrating In Vitro and In Silico Data in
Physiologically Based Models 167
Hannah M. Jones and Neil Parrott
10 Emerging Full Mechanistic Physiologically Based Modeling
189
Kiyohiko Sugano
11 Pharmacokinetic/Pharmacodynamic Modeling in Drug Discovery: A
Translational Tool to Optimize Discovery Compounds Toward the Ideal
Target-specific Profile 211
Patricia Schroeder
III Assessment and Mitigation of Critical Clinically Relevant Admet Risks in Drug Discovery and Development
12 In Vitro–In Silico Tools to Predict Pharmacokinetics of
Poorly Soluble Drug Compounds 235
Christian Wagner and Jennifer B. Dressman
13 Evaluation of the Collective Impact of Passive Permeability
and Active Transport on In Vivo Blood-brain Barrier and
Gastrointestinal Drug Absorption 263
Donna A. Volpe, Hong Shen, and Praveen V. Balimane
14 Integrated Assessment of Drug Clearance and Cross-Species
Scalability 291
Kevin Beaumont, James R. Gosset, and Chris E. Keefer
15 Practical Anticipation of Human Efficacious Doses and
Pharmacokinetics using Preclinical In Vitro and In Vivo Data
319
Tycho Heimbach, Rakesh Gollen, and Handan He
16 Management and Mitigation of Human Drug–drug Interaction
Risks in the Drug Discovery and Development Phases 353
Heidi J. Einolf and Imad Hanna
17 Integrated Assessment and Clinical Translation of In Vitro
Off-target Safety Pharmacology Risks 397
Patrick Y. Muller and Christian F. Trendelenburg
18 Integrated Risk Assessment of Cardiovascular Safety in Drug
Discovery 407
Gül Erdemli and Ruth L. Martin
19 Drug-induced Hepatotoxicity: Advances in Preclinical
Predictive Strategies and Tools 433
Donna M. Dambach
20 Carcinogenicity and Teratogenicity Assessment 467
Hans-Jörg Martus, David Beckman, and Lutz Mueller
21 Nephrotoxicity: Development of Biomarkers for Preclinical and
Clinical Application 491
Frank Dieterle and Estelle Marrer
IV Success Stories and Lessons Learned
22 Early Intervention with Formulation Strategies for
Multidimensional Problems to Optimize for Success 507
Stephanie Dodd, Christina Capacci-Daniel, Christopher Towler,
Riccardo Panicucci, and Keith Hoffmaster
23 Cytochrome P450-mediated Drug Interaction and Cardiovascular
Safety: The Seldane to Allegra Transformation 523
F. Peter Guengerich
24 Clinical Toxicity Profile of VEGF Inhibitors 535
Mark P. S. Sie and Ferry A. L. M. Eskens
25 Cardiomyopathy: Drug Induced and Predisposed 555
Shirley A. Aguirre and Eileen R. Blasi
26 Safety Management by Pharmacokinetic Considerations:
Ranibizumab (Lucentis) and Bevacizumab (Avastin) 569
Nicole H. Siegel and Manju L. Subramanian
Index 583
Jianling Wang is the Cambridge Head of DiscoveryADME at Novartis Institutes for BioMedical Research. He haspublished over 40 journal papers, reviews, and book chapters andlectured at over 30 scientific conferences and courses. Laszlo Urban is the Executive Director for PreclinicalSafety Profiling at Novartis Institutes for BioMedical Research. Hehas over 10 years of experience in academia and 20 years in thepharmaceutical industry. Among Dr. Urban s publications areover 120 peer-reviewed scientific papers, 3 booksincluding Hit and Lead Profiling: Identification andOptimization of Drug-like Molecules (Wiley, 2009).
“In conclusion, this volume fulfills its promise of being a very useful tool for guidance and diagnosis on ADMET matters, and I would recommend it to any scientist in the field.” (ChemMedChem, 1 June 2015)
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